# 'VigiBase' Pharmacovigilance Database Toolbox

## Documentation for package ‘vigicaen’ version 0.16.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

add_adr | Add ADR column(s) to a dataset
add_drug | Add DRUG column(s) to a dataset (tidyverse syntax)
adr_ | Data of immune checkpoint inhibitors.
cff | Fast formatting of numbers
check_dm | Check binary variables
compute_dispro | Compute disproportionality
compute_interaction | Compute interaction disproportionality
compute_or_mod | Compute (r)OR from a model summary
create_example_tables | Example source tables for VigiBase and MedDRA
create_ex_main_pq | Example source tables for VigiBase and MedDRA
create_ex_main_txt | Example source tables for VigiBase and MedDRA
create_ex_meddra_asc | Example source tables for VigiBase and MedDRA
create_ex_sub_pq | Example source tables for VigiBase and MedDRA
create_ex_sub_txt | Example source tables for VigiBase and MedDRA
create_ex_who_txt | Example source tables for VigiBase and MedDRA
demo_ | Data of immune checkpoint inhibitors.
desc_cont | Summarize continuous variables
desc_dch | Dechallenge descriptive
desc_facvar | Summarise categorical variables
desc_outcome | Outcome descriptive
desc_rch | Rechallenge descriptive
desc_tto | Time to onset descriptive
drug_ | Data of immune checkpoint inhibitors.
dt_fst | Read fst and convert to data.table
dt_parquet | Read parquet and convert to data.table
extract_tto | Time to onset extraction
ex_ | Data for the immune checkpoint inhibitors example
followup_ | Data of immune checkpoint inhibitors.
get_atc_code | Get ATC codes (DrecNos or MPIs)
get_drecno | Get DrecNo from drug names or MedicinalProd_Id
get_llt_smq | Extract low level terms from SMQs
get_llt_soc | Extract low level terms from soc classification
ic_tail | Credibility interval limits for the information component
ind_ | Data of immune checkpoint inhibitors.
link_ | Data of immune checkpoint inhibitors.
meddra_ | Sample of Meddra.
mp_ | Sample of WHODrug
nice_p | Nice printing of p-values
out_ | Data of immune checkpoint inhibitors.
screen_adr | Screening of Adverse Drug Reactions
screen_drug | Screening of Drugs
smq_content_ | Sample of Meddra.
smq_list_ | Sample of Meddra.
smq_list_content_ | Sample of Meddra.
srce_ | Data of immune checkpoint inhibitors.
tb_meddra | Create MedDRA tables
tb_subset | Extract of subset of Vigibase
tb_vigibase | Create main VigiBase ECL tables
tb_who | Create main WHO tables
thg_ | Sample of WHODrug
vigi_routine | Pharmacovigilance routine function