Last updated on 2026-01-22 23:51:00 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 41.15 | 810.76 | 851.91 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 23.37 | 548.58 | 571.95 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 63.00 | 1301.41 | 1364.41 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 59.00 | 1153.46 | 1212.46 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 39.00 | 582.00 | 621.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 53.49 | 732.84 | 786.33 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 32.24 | 740.46 | 772.70 | OK | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 26.00 | 542.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 37.00 | 530.00 | 567.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 8.00 | 123.00 | 131.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 26.00 | 741.00 | 767.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 54.00 | 674.00 | 728.00 | ERROR |
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [108s/53s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-23 06:55:41.711622: Isomap START
> test_pipeop_isomap.R: 2026-01-23 06:55:41.711888: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 06:55:41.715142: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 06:55:41.72139: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 06:55:41.732698: Isomap START
> test_pipeop_isomap.R: 2026-01-23 06:55:41.732836: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 06:55:41.735089: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 06:55:41.741145: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 06:55:41.748995: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 06:55:41.749199: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 06:55:41.764343: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 06:55:41.779351: embedding
> test_pipeop_isomap.R: 2026-01-23 06:55:41.77984: DONE
> test_pipeop_isomap.R: 2026-01-23 06:55:41.787436: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 06:55:41.787591: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 06:55:41.791838: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 06:55:41.806547: embedding
> test_pipeop_isomap.R: 2026-01-23 06:55:41.806922: DONE
> test_pipeop_isomap.R: 2026-01-23 06:55:41.829371: Isomap START
> test_pipeop_isomap.R: 2026-01-23 06:55:41.829543: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 06:55:41.834258: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 06:55:41.86823: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 06:55:41.877211: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 06:55:41.877409: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 06:55:41.892057: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 06:55:41.970946: embedding
> test_pipeop_isomap.R: 2026-01-23 06:55:41.972104: DONE
> test_pipeop_isomap.R: 2026-01-23 06:55:42.007206: Isomap START
> test_pipeop_isomap.R: 2026-01-23 06:55:42.007347: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 06:55:42.009568: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 06:55:42.015713: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 06:55:42.022379: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 06:55:42.022529: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 06:55:42.027074: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 06:55:42.04203: embedding
> test_pipeop_isomap.R: 2026-01-23 06:55:42.042437: DONE
> test_pipeop_isomap.R: 2026-01-23 06:55:42.076476: Isomap START
> test_pipeop_isomap.R: 2026-01-23 06:55:42.076626: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 06:55:42.085488: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 06:55:42.091806: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 06:55:42.104825: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 06:55:42.105108: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 06:55:42.109983: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 06:55:42.124812: embedding
> test_pipeop_isomap.R: 2026-01-23 06:55:42.125208: DONE
> test_pipeop_isomap.R: 2026-01-23 06:55:42.144407: Isomap START
> test_pipeop_isomap.R: 2026-01-23 06:55:42.144542: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 06:55:42.146574: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 06:55:42.152424: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 06:55:42.164831: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 06:55:42.165012: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 06:55:42.169629: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 06:55:42.184455: embedding
> test_pipeop_isomap.R: 2026-01-23 06:55:42.184837: DONE
> test_pipeop_isomap.R: 2026-01-23 06:55:42.212992: Isomap START
> test_pipeop_isomap.R: 2026-01-23 06:55:42.21314: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 06:55:42.21545: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 06:55:42.221654: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 06:55:42.234275: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 06:55:42.234485: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 06:55:42.239245: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 06:55:42.254041: embedding
> test_pipeop_isomap.R: 2026-01-23 06:55:42.25446: DONE
> test_pipeop_isomap.R: 2026-01-23 06:55:42.273804: Isomap START
> test_pipeop_isomap.R: 2026-01-23 06:55:42.273964: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 06:55:42.2764: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 06:55:42.283244: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 06:55:42.294922: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-23 06:55:42.295101: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 06:55:42.299542: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 06:55:42.315038: embedding
> test_pipeop_isomap.R: 2026-01-23 06:55:42.315532: DONE
> test_pipeop_isomap.R: 2026-01-23 06:55:42.34504: Isomap START
> test_pipeop_isomap.R: 2026-01-23 06:55:42.345188: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 06:55:42.347417: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 06:55:42.35347: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 06:55:42.372374: Isomap START
> test_pipeop_isomap.R: 2026-01-23 06:55:42.372514: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 06:55:42.374707: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 06:55:42.380668: Classical Scaling
> test_pipeop_isomap.R: 2026-01-23 06:55:42.387207: Isomap START
> test_pipeop_isomap.R: 2026-01-23 06:55:42.387369: constructing knn graph
> test_pipeop_isomap.R: 2026-01-23 06:55:42.389778: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-23 06:55:42.395837: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [321s/418s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-22 16:26:59.987704: Isomap START
> test_pipeop_isomap.R: 2026-01-22 16:26:59.988227: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 16:27:00.020006: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 16:27:00.070888: Classical Scaling
> test_pipeop_isomap.R: 2026-01-22 16:27:00.190089: Isomap START
> test_pipeop_isomap.R: 2026-01-22 16:27:00.190382: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 16:27:00.196836: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 16:27:00.242404: Classical Scaling
> test_pipeop_isomap.R: 2026-01-22 16:27:00.294611: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-22 16:27:00.29505: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 16:27:00.362228: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 16:27:00.478533: embedding
> test_pipeop_isomap.R: 2026-01-22 16:27:00.479682: DONE
> test_pipeop_isomap.R: 2026-01-22 16:27:00.544681: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-22 16:27:00.544993: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 16:27:00.574731: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 16:27:00.674367: embedding
> test_pipeop_isomap.R: 2026-01-22 16:27:00.675487: DONE
> test_pipeop_isomap.R: 2026-01-22 16:27:00.897727: Isomap START
> test_pipeop_isomap.R: 2026-01-22 16:27:00.898159: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 16:27:00.949607: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 16:27:01.226851: Classical Scaling
> test_pipeop_isomap.R: 2026-01-22 16:27:01.318049: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-22 16:27:01.31847: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 16:27:01.370984: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 16:27:01.924932: embedding
> test_pipeop_isomap.R: 2026-01-22 16:27:01.929298: DONE
> test_pipeop_isomap.R: 2026-01-22 16:27:02.229924: Isomap START
> test_pipeop_isomap.R: 2026-01-22 16:27:02.230229: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 16:27:02.268923: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 16:27:02.316033: Classical Scaling
> test_pipeop_isomap.R: 2026-01-22 16:27:02.376394: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-22 16:27:02.376833: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 16:27:02.41651: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 16:27:02.511609: embedding
> test_pipeop_isomap.R: 2026-01-22 16:27:02.51285: DONE
> test_pipeop_isomap.R: 2026-01-22 16:27:02.791775: Isomap START
> test_pipeop_isomap.R: 2026-01-22 16:27:02.792099: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 16:27:02.808928: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 16:27:02.865551: Classical Scaling
> test_pipeop_isomap.R: 2026-01-22 16:27:02.948677: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-22 16:27:02.959483: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 16:27:02.985715: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 16:27:03.077876: embedding
> test_pipeop_isomap.R: 2026-01-22 16:27:03.079034: DONE
> test_pipeop_isomap.R: 2026-01-22 16:27:03.209134: Isomap START
> test_pipeop_isomap.R: 2026-01-22 16:27:03.209444: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 16:27:03.245936: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 16:27:03.290392: Classical Scaling
> test_pipeop_isomap.R: 2026-01-22 16:27:03.400583: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-22 16:27:03.401: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 16:27:03.425984: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 16:27:03.526431: embedding
> test_pipeop_isomap.R: 2026-01-22 16:27:03.52865: DONE
> test_pipeop_isomap.R: 2026-01-22 16:27:03.726527: Isomap START
> test_pipeop_isomap.R: 2026-01-22 16:27:03.726827: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 16:27:03.74372: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 16:27:03.785264: Classical Scaling
> test_pipeop_isomap.R: 2026-01-22 16:27:03.852697: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-22 16:27:03.853139: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 16:27:03.885351: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 16:27:03.972787: embedding
> test_pipeop_isomap.R: 2026-01-22 16:27:03.973972: DONE
> test_pipeop_isomap.R: 2026-01-22 16:27:04.171984: Isomap START
> test_pipeop_isomap.R: 2026-01-22 16:27:04.172273: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 16:27:04.213455: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 16:27:04.256152: Classical Scaling
> test_pipeop_isomap.R: 2026-01-22 16:27:04.368207: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-22 16:27:04.36885: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 16:27:04.40809: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 16:27:04.538394: embedding
> test_pipeop_isomap.R: 2026-01-22 16:27:04.539841: DONE
> test_pipeop_isomap.R: 2026-01-22 16:27:04.714017: Isomap START
> test_pipeop_isomap.R: 2026-01-22 16:27:04.714327: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 16:27:04.721071: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 16:27:04.750087: Classical Scaling
> test_pipeop_isomap.R: 2026-01-22 16:27:04.924986: Isomap START
> test_pipeop_isomap.R: 2026-01-22 16:27:04.925285: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 16:27:04.954391: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 16:27:04.99919: Classical Scaling
> test_pipeop_isomap.R: 2026-01-22 16:27:05.071054: Isomap START
> test_pipeop_isomap.R: 2026-01-22 16:27:05.071363: constructing knn graph
> test_pipeop_isomap.R: 2026-01-22 16:27:05.078188: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-22 16:27:05.107902: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 1.336181')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [297s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-21 13:20:09.533197: Isomap START
> test_pipeop_isomap.R: 2026-01-21 13:20:09.534305: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 13:20:09.550783: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 13:20:09.573964: Classical Scaling
> test_pipeop_isomap.R: 2026-01-21 13:20:09.648512: Isomap START
> test_pipeop_isomap.R: 2026-01-21 13:20:09.649169: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 13:20:09.662158: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 13:20:09.684747: Classical Scaling
> test_pipeop_isomap.R: 2026-01-21 13:20:09.729295: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-21 13:20:09.73043: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 13:20:09.753811: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 13:20:09.801492: embedding
> test_pipeop_isomap.R: 2026-01-21 13:20:09.803389: DONE
> test_pipeop_isomap.R: 2026-01-21 13:20:09.847483: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-21 13:20:09.848117: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 13:20:09.870737: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 13:20:09.919824: embedding
> test_pipeop_isomap.R: 2026-01-21 13:20:09.921703: DONE
> test_pipeop_isomap.R: 2026-01-21 13:20:10.099854: Isomap START
> test_pipeop_isomap.R: 2026-01-21 13:20:10.100493: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 13:20:10.116901: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 13:20:10.208197: Classical Scaling
> test_pipeop_isomap.R: 2026-01-21 13:20:10.258954: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-21 13:20:10.259888: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 13:20:10.300684: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 13:20:10.530857: embedding
> test_pipeop_isomap.R: 2026-01-21 13:20:10.53663: DONE
> test_pipeop_isomap.R: 2026-01-21 13:20:10.742551: Isomap START
> test_pipeop_isomap.R: 2026-01-21 13:20:10.743261: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 13:20:10.757: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 13:20:10.780097: Classical Scaling
> test_pipeop_isomap.R: 2026-01-21 13:20:10.832479: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-21 13:20:10.833121: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 13:20:10.852163: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 13:20:10.894227: embedding
> test_pipeop_isomap.R: 2026-01-21 13:20:10.895714: DONE
> test_pipeop_isomap.R: 2026-01-21 13:20:11.12751: Isomap START
> test_pipeop_isomap.R: 2026-01-21 13:20:11.128284: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 13:20:11.140055: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 13:20:11.162909: Classical Scaling
> test_pipeop_isomap.R: 2026-01-21 13:20:11.257372: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-21 13:20:11.258615: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 13:20:11.282257: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 13:20:11.355056: embedding
> test_pipeop_isomap.R: 2026-01-21 13:20:11.368733: DONE
> test_pipeop_isomap.R: 2026-01-21 13:20:11.523309: Isomap START
> test_pipeop_isomap.R: 2026-01-21 13:20:11.524094: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 13:20:11.533215: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 13:20:11.551889: Classical Scaling
> test_pipeop_isomap.R: 2026-01-21 13:20:11.637476: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-21 13:20:11.638381: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 13:20:11.661374: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 13:20:11.712409: embedding
> test_pipeop_isomap.R: 2026-01-21 13:20:11.71396: DONE
> test_pipeop_isomap.R: 2026-01-21 13:20:11.833517: Isomap START
> test_pipeop_isomap.R: 2026-01-21 13:20:11.83416: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 13:20:11.846241: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 13:20:11.868163: Classical Scaling
> test_pipeop_isomap.R: 2026-01-21 13:20:11.947156: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-21 13:20:11.948053: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 13:20:11.968304: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 13:20:12.016866: embedding
> test_pipeop_isomap.R: 2026-01-21 13:20:12.018591: DONE
> test_pipeop_isomap.R: 2026-01-21 13:20:12.146642: Isomap START
> test_pipeop_isomap.R: 2026-01-21 13:20:12.147157: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 13:20:12.158907: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 13:20:12.180555: Classical Scaling
> test_pipeop_isomap.R: 2026-01-21 13:20:12.258694: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-21 13:20:12.25967: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 13:20:12.281629: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 13:20:12.330604: embedding
> test_pipeop_isomap.R: 2026-01-21 13:20:12.332409: DONE
> test_pipeop_isomap.R: 2026-01-21 13:20:12.486036: Isomap START
> test_pipeop_isomap.R: 2026-01-21 13:20:12.486876: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 13:20:12.500256: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 13:20:12.520625: Classical Scaling
> test_pipeop_isomap.R: 2026-01-21 13:20:12.666761: Isomap START
> test_pipeop_isomap.R: 2026-01-21 13:20:12.667475: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 13:20:12.679318: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 13:20:12.720941: Classical Scaling
> test_pipeop_isomap.R: 2026-01-21 13:20:12.782988: Isomap START
> test_pipeop_isomap.R: 2026-01-21 13:20:12.783856: constructing knn graph
> test_pipeop_isomap.R: 2026-01-21 13:20:12.796792: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-21 13:20:12.819344: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64