Package |
Maintainer |
Title |
apComplex
|
Denise Scholtens |
Estimate protein complex membership using AP-MS protein data |
biocGraph
|
Florian Hahne |
Graph examples and use cases in Bioinformatics |
BioMVCClass
|
Elizabeth Whalen |
Model-View-Controller (MVC) Classes That Use Biobase |
CORREP
|
Dongxiao Zhu |
Multivariate Correlation Estimator and Statistical Inference
Procedures. |
gaggle
|
Dan Tenenbaum |
Broadcast data between R and other bioinformatics programs |
gene2pathway
|
Holger Froehlich |
Prediction of KEGG pathway membership for individual genes based
on InterPro domain signatures |
graph
|
Robert Gentleman |
graph: A package to handle graph data structures |
GraphAlignment
|
Joern P. Meier |
GraphAlignment |
GraphAT
|
Thomas LaFramboise |
Graph Theoretic Association Tests |
hypergraph
|
Robert Gentleman |
A package providing hypergraph data structures |
KEGGgraph
|
Jitao David Zhang |
KEGGgraph: A graph approach to KEGG PATHWAY in R and
Bioconductor |
keggorth
|
VJ Carey |
graph support for KO, KEGG Orthology |
maigesPack
|
Gustavo H. Esteves |
Functions to handle cDNA microarray data, including several
methods of data analysis |
minet
|
Patrick E. Meyer |
Mutual Information Network Inference |
MVCClass
|
Elizabeth Whalen |
Model-View-Controller (MVC) Classes |
nem
|
Christian Bender |
Nested Effects Models to reconstruct phenotypic hierarchies |
ontoTools
|
Vince Carey |
graphs and sparse matrices for working with ontologies; formal
objects for nomenclatures with provenance management |
pathRender
|
Li Long |
Render molecular pathways |
PCpheno
|
Nolwenn Le Meur |
Phenotypes and cellular organizational units |
pkgDepTools
|
Seth Falcon |
Package Dependency Tools |
ppiStats
|
Tony Chiang |
Protein-Protein Interaction Statistical Package |
qpgraph
|
Robert Castelo |
Reverse engineering of molecular regulatory networks with
qp-graphs |
RBGL
|
Li Long |
An interface to the BOOST graph library |
Rgraphviz
|
Kasper Hansen |
Provides plotting capabilities for R graph objects |
rHVDM
|
Martino Barenco |
Hidden Variable Dynamic Modeling |
rsbml
|
Michael Lawrence |
R support for SBML, using libsbml |
SBMLR
|
Tomas Radivoyevitch |
SBML-R Interface and Analysis Tools |
ScISI
|
Tony Chiang |
In Silico Interactome |
simulatorAPMS
|
Tony Chiang |
Computationally simulates the AP-MS technology. |
SLGI
|
Nolwenn Le Meur |
Synthetic Lethal Genetic Interaction |
SPIA
|
Adi Laurentiu Tarca |
Signaling Pathway Impact Analysis (SPIA) using combined evidence
of pathway over-representation and unusual signaling
perturbations |