AffyCompatible

Affymetrix GeneChip software compatibility

This package provides an interface to Affymetrix chip annotation and sample attribute files. The package allows an easy way for users to download and manage local data bases of Affynmetrix NetAffx annotation files. The package also provides access to GeneChip Operating System (GCOS) and GeneChip Command Console (AGCC)-compatible sample annotation files.

Author	Martin Morgan, Robert Gentleman
Maintainer	Martin Morgan

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("AffyCompatible")

Documentation

Retrieving MAGE and ARR sample attributes	PDF	R Script
Annotation retrieval with NetAffxResource	PDF	R Script
Reference Manual

Details

biocViews	Infrastructure , Microarray , OneChannel
Depends	R , XML , RCurl , methods
Imports	Biostrings
Suggests
System Requirements
License	Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me	oneChannelGUI
Development History	Bioconductor Changelog

Package Downloads

Package source	AffyCompatible_1.4.0.tar.gz
Windows binary	AffyCompatible_1.4.0.zip
MacOS X 10.4 (Tiger) binary	AffyCompatible_1.4.0.tgz
MacOS X 10.5 (Leopard) binary	AffyCompatible_1.4.0.tgz
Package Downloads Report	Downloads Stats