BCRANK

Predicting binding site consensus from ranked DNA sequences

Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search

Author	Adam Ameur
Maintainer	Adam Ameur

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("BCRANK")

Documentation

BCRANK_intro_fig1.pdf	PDF
BCRANK_intro_fig2.pdf	PDF
BCRANK	PDF	R Script
Reference Manual

Details

biocViews	SequenceMatching
Depends	methods
Imports	Biostrings
Suggests	seqLogo
System Requirements
License	GPL, version 2
URL
Depends On Me
Imports Me
Suggests Me
Development History	Bioconductor Changelog

Package Downloads

Package source	BCRANK_1.6.0.tar.gz
Windows binary	BCRANK_1.6.0.zip
MacOS X 10.4 (Tiger) binary	BCRANK_1.6.0.tgz
MacOS X 10.5 (Leopard) binary	BCRANK_1.6.0.tgz
Package Downloads Report	Downloads Stats