GraphAlignment

GraphAlignment

Graph alignment is an extension package for the R programming environment which provides functions for finding an alignment between two networks based on link and node similarity scores. (J. Berg and M. Laessig, "Cross-species analysis of biological networks by Bayesian alignment", PNAS 103 (29), 10967-10972 (2006))

Author Joern P. Meier , Michal Kolar, Ville Mustonen, Michael Laessig, and Johannes Berg.
Maintainer Joern P. Meier

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GraphAlignment")

Documentation

a.pdf PDF
align_principle_short1.pdf PDF
align_principle2b1.pdf PDF
align_principle2c1.pdf PDF
binning-01a.pdf PDF
GraphAlignment PDF R Script
Reference Manual

Details

biocViews
GraphsAndNetworks
Depends
Imports
Suggests
System Requirements
License file LICENSE
URL http://www.thp.uni-koeln.de/~berg/GraphAlignment/
Depends On Me
Imports Me
Suggests Me
Development History Bioconductor Changelog

Package Downloads

Package source GraphAlignment_1.6.0.tar.gz
Windows binary GraphAlignment_1.6.0.zip
MacOS X 10.4 (Tiger) binary GraphAlignment_1.6.0.tgz
MacOS X 10.5 (Leopard) binary GraphAlignment_1.6.0.tgz
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