LPE

Methods for analyzing microarray data using Local Pooled Error (LPE) method

This LPE library is used to do significance analysis of microarray data with small number of replicates. It uses resampling based FDR adjustment, and gives less conservative results than traditional 'BH' or 'BY' procedures. Data accepted is raw data in txt format from MAS4, MAS5 or dChip. Data can also be supplied after normalization. LPE library is primarily used for analyzing data between two conditions. To use it for paired data, see LPEP library. For using LPE in multiple conditions, use HEM library.

Author Nitin Jain , Michael O'Connell , Jae K. Lee . Includes R source code contributed by HyungJun Cho
Maintainer Nitin Jain

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("LPE")

Documentation

LPE test for microarray data with small number of replicates PDF R Script
Reference Manual

Details

biocViews
Depends
stats
Imports
grDevices , methods , stats , utils
Suggests
System Requirements
License LGPL
URL http://www.r-project.org,
Depends On Me
Imports Me
Suggests Me
Development History Bioconductor Changelog

Package Downloads

Package source LPE_1.18.0.tar.gz
Windows binary LPE_1.18.0.zip
MacOS X 10.4 (Tiger) binary LPE_1.18.0.tgz
MacOS X 10.5 (Leopard) binary LPE_1.18.0.tgz
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