arrayMvout

multivariate outlier detection for expression array QA

This package supports the application of diverse quality metrics to AffyBatch instances, summarizing these metrics via PCA, and then performing parametric outlier detection on the PCs to identify aberrant arrays with a fixed Type I error rate

Author	Z. Gao, A. Asare, R. Wang, V. Carey
Maintainer	V. Carey

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("arrayMvout")

Documentation

arrayMvout-asdad.pdf	PDF
arrayMvout-lkadas.pdf	PDF
arrayMvout-lkda.pdf	PDF
arrayMvout -- multivariate outlier algorithm for expression arrays	PDF	R Script
Reference Manual

Details

biocViews	Infrastructure , Bioinformatics , Microarray , QualityControl
Depends	R , tools , methods , utils , parody , Biobase , affy , lumi
Imports	simpleaffy , mdqc , affyContam
Suggests	MAQCsubset , mvoutData , lumiBarnes , affyPLM , affydata , hgu133atagcdf
System Requirements
License	The Artistic License, Version 2.0
URL
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Development History	Bioconductor Changelog

Package Downloads

Package source	arrayMvout_1.2.0.tar.gz
Windows binary	arrayMvout_1.2.0.zip
MacOS X 10.4 (Tiger) binary	arrayMvout_1.2.0.tgz
MacOS X 10.5 (Leopard) binary	arrayMvout_1.2.0.tgz
Package Downloads Report	Downloads Stats