cghMCR

Find chromosome regions showing common gains/losses

Based on the algothrim proposed by Dr. Lynda Chin's lab, this package provides functions that identify chromosome regions that show gains/losses commonly observed across different samples profiled using arrayCGH platform.

Author	J. Zhang and B. Feng
Maintainer	J. Zhang

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("cghMCR")

Documentation

cghMCR findMCR	PDF	R Script
Reference Manual

Details

biocViews	Platform , Microarray
Depends	methods , DNAcopy , marray , arrayQuality
Imports
Suggests
System Requirements
License	LGPL
URL
Depends On Me
Imports Me
Suggests Me
Development History	Bioconductor Changelog

Package Downloads

Package source	cghMCR_1.14.0.tar.gz
Windows binary	cghMCR_1.14.0.zip
MacOS X 10.4 (Tiger) binary	cghMCR_1.14.0.tgz
MacOS X 10.5 (Leopard) binary	cghMCR_1.14.0.tgz
Package Downloads Report	Downloads Stats