pdInfoBuilder

Platform Design Information Package Builder

Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.

Author	Seth Falcon, Benilton Carvalho with contributions by Vince Carey and Matt Settles
Maintainer	Benilton Carvalho

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("pdInfoBuilder")

Documentation

Building Annotation Packages with pdInfoBuilder for Use with the oligo Package	PDF	R Script
PDInfo Package Building Affymetrix Mapping Chips	PDF	R Script
Reference Manual

Details

biocViews	Annotation , Infrastructure
Depends	R , methods , Biobase , RSQLite , affxparser , oligo
Imports	Biobase , Biostrings , IRanges
Suggests
System Requirements
License	Artistic-2.0
URL
Depends On Me
Imports Me
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Development History	Bioconductor Changelog

Package Downloads

Package source	pdInfoBuilder_1.8.1.tar.gz
Windows binary	pdInfoBuilder_1.8.1.zip
MacOS X 10.4 (Tiger) binary	pdInfoBuilder_1.8.1.tgz
MacOS X 10.5 (Leopard) binary	pdInfoBuilder_1.8.1.tgz
Package Downloads Report	Downloads Stats