rMAT
R implementation from MAT program to normalize and analyze
tiling arrays and ChIP-chip data.
This package is an R version of the package MAT and
contains functions to parse and merge Affymetrix BPMAP and CEL
tiling array files (using C++ based Fusion SDK and Bioconductor
package affxparser), normalize tiling arrays using sequence
specific models, detect enriched regions from ChIP-chip
experiments. Note: users should have GSL anf GenomeGraphs
installed. Windows users: 'consult the README file available in
the inst directory of the source distribution for necessary
configuration instructions'.
| Author |
Charles Cheung and Arnaud Droit and Raphael Gottardo |
| Maintainer |
Arnaud Droit and Raphael Gottardo
|
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("rMAT")
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