To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BSgenome.Hsapiens.UCSC.hg19")

In most cases, you don't need to download the package archive at all.

BSgenome.Hsapiens.UCSC.hg19

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see BSgenome.Hsapiens.UCSC.hg19.

Full genome sequences for Homo sapiens (UCSC version hg19)

Bioconductor version: 3.2

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg19, Feb. 2009) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Hsapiens.UCSC.hg19")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BSgenome.Hsapiens.UCSC.hg19")


PDF		Reference Manual

biocViews	AnnotationData, BSgenome, Genetics, Homo_sapiens
Version	1.4.0
License	Artistic-2.0
Depends	BSgenome(>= 1.33.5)
Imports	BSgenome
LinkingTo
Suggests	TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL
Depends On Me	BSgenome.Hsapiens.UCSC.hg19.masked, chimera, CODEX, motifRG, traseR
Imports Me	BSgenome.Hsapiens.UCSC.hg19.masked, ChIPComp
Suggests Me	ArrayTV, Basic4Cseq, BBCAnalyzer, biovizBase, CRISPRseek, customProDB, FDb.FANTOM4.promoters.hg19, FDb.UCSC.snp135common.hg19, FDb.UCSC.snp137common.hg19, GenomicAlignments, GenomicFeatures, GenomicRanges, ggbio, gmapR, GoogleGenomics, GUIDEseq, Gviz, h5vc, HTSeqGenie, InPAS, MEDIPS, MinimumDistance, MiRaGE, motifbreakR, oneChannelGUI, OrganismDbi, PGA, R453Plus1Toolbox, Rariant, rGADEM, RiboProfiling, Rsamtools, RSVSim, rtracklayer, SGSeq, SNPlocs.Hsapiens.dbSNP.20100427, SNPlocs.Hsapiens.dbSNP.20101109, SNPlocs.Hsapiens.dbSNP.20110815, SNPlocs.Hsapiens.dbSNP.20111119, SNPlocs.Hsapiens.dbSNP.20120608, SNPlocs.Hsapiens.dbSNP142.GRCh37, SNPlocs.Hsapiens.dbSNP144.GRCh37, SomaticSignatures, spliceR, VariantAnnotation, VariantFiltering, wavClusteR, XtraSNPlocs.Hsapiens.dbSNP144.GRCh37

Follow Installation instructions to use this package in your R session.

Package Source	BSgenome.Hsapiens.UCSC.hg19_1.4.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Package Short Url	http://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg19/
Package Downloads Report	Download Stats

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