- Home
- Bioconductor 3.2
- Experiment Packages
- ConnectivityMap
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ConnectivityMap")
In most cases, you don't need to download the package archive at all.
ConnectivityMap
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see ConnectivityMap.
Functional connections between drugs, genes and diseases as revealed by common gene-expression changes
Bioconductor version: 3.2
The Broad Institute's Connectivity Map (cmap02) is a "large reference catalogue of gene-expression data from cultured human cells perturbed with many chemicals and genetic reagents", containing more than 7000 gene expression profiles and 1300 small molecules.
Author: Paul Shannon
Maintainer: Paul Shannon<pshannon at fhcrc.org>
Citation (from within R,
enter citation("ConnectivityMap")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ConnectivityMap")
Documentation
| Reference Manual |
Details
| biocViews | CancerData, ExperimentData, MicroarrayData |
| Version | 1.6.0 |
| License | GPL-3 |
| Depends | R (>= 2.15.1) |
| Imports | |
| LinkingTo | |
| Suggests | RUnit, BiocGenerics |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ConnectivityMap_1.6.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/ConnectivityMap/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
