- Home
- Bioconductor 3.2
- Experiment Packages
- LungCancerLines
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("LungCancerLines")
In most cases, you don't need to download the package archive at all.
LungCancerLines
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see LungCancerLines.
Reads from Two Lung Cancer Cell Lines
Bioconductor version: 3.2
Reads from an RNA-seq experiment between two lung cancer cell lines: H1993 (met) and H2073 (primary). The reads are stored as Fastq files and are meant for use with the TP53Genome object in the gmapR package.
Author: Cory Barr, Michael Lawrence
Maintainer: Cory Barr <barr.cory at gene.com>
Citation (from within R,
enter citation("LungCancerLines")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("LungCancerLines")
Documentation
| Reference Manual |
Details
| biocViews | CancerData, ExperimentData, Genome, LungCancerData, RNASeqData |
| Version | 0.8.0 |
| License | Artistic-2.0 |
| Depends | |
| Imports | Rsamtools |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | gmapR, HTSeqGenie, VariantTools |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | LungCancerLines_0.8.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/LungCancerLines/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
