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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("shinyMethylData")
In most cases, you don't need to download the package archive at all.
shinyMethylData
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This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see shinyMethylData.
Example dataset of input data for shinyMethyl
Bioconductor version: 3.2
Extracted data from 369 TCGA Head and Neck Cancer DNA methylation samples. The extracted data serve as an example dataset for the package shinyMethyl. Original samples are from 450k methylation arrays, and were obtained from The Cancer Genome Atlas (TCGA). 310 samples are from tumor, 50 are matched normals and 9 are technical replicates of a control cell line.
Author: Jean-Philippe Fortin [cre, aut], Kasper Daniel Hansen [aut]
Maintainer: Jean-Philippe Fortin <jfortin at jhsph.edu>
Citation (from within R,
enter citation("shinyMethylData")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("shinyMethylData")
Documentation
| Reference Manual |
Details
| biocViews | CancerData, ExperimentData, Genome |
| Version | 0.104.0 |
| License | Artistic-2.0 |
| Depends | R (>= 3.0.0) |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | shinyMethyl |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | shinyMethylData_0.104.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/shinyMethylData/ |
| Package Downloads Report | Download Stats |
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