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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SNPlocs.Hsapiens.dbSNP.20090506")
In most cases, you don't need to download the package archive at all.
SNPlocs.Hsapiens.dbSNP.20090506
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This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see SNPlocs.Hsapiens.dbSNP.20090506.
SNP locations for Homo sapiens (dbSNP Build 130)
Bioconductor version: 3.2
SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 130. The source data files used for this package were created by NCBI on 5-6 May, 2009, and contain SNPs mapped to reference genome NCBI Build 36.1, which is identical to the hg18 genome from UCSC. Therefore, the SNPs in this package can be "injected" in BSgenome.Hsapiens.UCSC.hg18 and they will land at the correct location.
Author: Herve Pages
Maintainer: H. Pages <hpages at fhcrc.org>
Citation (from within R,
enter citation("SNPlocs.Hsapiens.dbSNP.20090506")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SNPlocs.Hsapiens.dbSNP.20090506")
Documentation
| Reference Manual |
Details
| biocViews | AnnotationData, Genetics, Homo_sapiens |
| Version | 0.99.9 |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), IRanges, GenomicRanges, BSgenome(>= 1.25.6) |
| Imports | methods, utils, IRanges, GenomicRanges, BSgenome |
| LinkingTo | |
| Suggests | Biostrings, BSgenome.Hsapiens.UCSC.hg18(>= 1.3.19) |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | ind1KG |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | SNPlocs.Hsapiens.dbSNP.20090506_0.99.9.tar.gz |
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Package Short Url | http://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP.20090506/ |
| Package Downloads Report | Download Stats |
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